Cutadapt not outputting paired dataset list in both history and workflow

I’m trying to do RNAseq trimming and mapping with CutAdapt and RNA Star

I’m using paired dataset list as input for CutAdapt, but I cant output a paired dataset list. Everytime I need to manually redo the paired data set collection only after CutAdapt finishes outputting.

Counting that RNA star does take the paired dataset list, is there any way to output CutAdapt fastq as paired dataset list, or to automatically create a paired dataset collection with READ1 and READ2 outputs of CutAdapt in workflows?


Paired Data list input for CutAdapt and two data lists output (non-paired)


CutAdapt output not connecting to STAR paired end collection input