I’m trying to do RNAseq trimming and mapping with CutAdapt and RNA Star
I’m using paired dataset list as input for CutAdapt, but I cant output a paired dataset list. Everytime I need to manually redo the paired data set collection only after CutAdapt finishes outputting.
Counting that RNA star does take the paired dataset list, is there any way to output CutAdapt fastq as paired dataset list, or to automatically create a paired dataset collection with READ1 and READ2 outputs of CutAdapt in workflows?