Dependency error in Frogs installation

metagenomics
frogs
#1

I am trying to install the Frogs version https://toolshed.g2.bx.psu.edu/view/frogs/frogs_2_0_0/76c750c5f0d1

Unfortunately, i am not able to resolve following dependencies

FROGS Demultiplex reads frogs
perl-io-zlib
perl-io-gzip
perl

Kindly help me to resolve the problem faced for my Galaxy installation.

1 Like

#2

Hello,

First, make sure that your Galaxy install is up to date. The most current release is 19.01: https://docs.galaxyproject.org/en/master/releases/index.html

From there you have choices:

If it fails again, or you want to install line command, either contact the repository owners (http://frogs.toulouse.inra.fr/) or open a ticket at the development repository reporting the problem (https://github.com/geraldinepascal/FROGS-wrappers).

From the error message you shared, I’m not sure of the scope of problems that could be involved. The developers that created the tools will be able to offer more help to troubleshoot – and let you know about any known issues with the older tool version. It could be a problem as simple as an incompatible perl version or something else (disc space exceeded?).

0 Likes

#3

Hi,
I encountered the same problem. Installing version 3.1.0 solved dependencies problem.
Cheers

2 Likes

#4

Welcome, @nagoue! Thanks for posting back confirmation the upgraded tool option works

0 Likes

#5

Thanks for your reply,

You are right, for version 3.1.0 it is working

1 Like