Hi, I’m currently analyzing a dataset produced from DESeq2 in Galaxy. I have two factors, each with three factor levels:
Factor 1: Hour (0, 5, 24 hrs) Factor 2: Tissue (A, B, C)
The summary plots and results files only compare two factor levels at a time, i.e. 24 hrs vs 0 hrs, and tissue C vs tissue A. How can I get the results file for other comparisons, such as 5 hrs vs 24 hrs, or tissue B vs tissue A? I know in R, using the “contrast” argument can do this. Is this possible in Galaxy?
Thanks in advance!