Dear everyone, I tried to analyze RNA-seq data successfully. Unfortunately, after running the DeSEQ2 tool I get the following error: Warning message: In Sys.setlocale(“LC_MESSAGES”, “en_US.UTF-8”) : OS reports request to set locale to “en_US.UTF-8” cannot be honored estimating size factors est…

Hi @inivasDL , hi @DCEM_NCU I realized it is way too late, but came across a similar error recently. In that case the issue was caused by genes with zero counts in every sample. Filtering out zero count genes helps. Alternatively, try other tools, such as edgeR. Kind regards, Igor

DeSeq2 Fatal Error - US.UTF-8 cannot be honored

jennaj Split this topic November 1, 2023, 4:22pm 4

A post was split to a new topic: Troubleshooting DexSeq

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DeSeq2 Fatal Error - US.UTF-8 cannot be honored

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