Error_data import from Galaxy history into rstudio

Hello there,

I am trying to import some txt files from my galaxy history into the Rstudio in I am continuously getting an error message.

first half of the error message:

DEBUG:root:Host IP determined to be b’\n’
DEBUG:root:TestURL url= obj=False
/opt/miniconda/lib/python3.9/site-packages/bioblend/galaxy/histories/ FutureWarning: The history_id parameter is deprecated, use the show_history() method to view details of a history for which you know the ID.
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1):
DEBUG:urllib3.connectionpool: “GET /api/histories HTTP/1.1” 200 None
DEBUG:root:TestURL url= state=success

Creating a new history and redoing it with a fresh session also does not help. Even changing the browser from Microsoft Edge to Google Chrome did not help.

Can anyone help?


Hi @srinivasa_abishek

Are you using one of these commands?

  • gx_get() to move files from the history into the Rstudio environment
  • gx_put() to do the reverse
  • gx_save() to save the session history


If something is going on special at that server, the EU moderators will be online in a few hours.

Yes. I am using the gx_get() command to import files from the galaxy history in which the Rstudio tool was initiated. But it is not working. I am getting the same error message again.

If this is still a problem, would you post back the actual command and a screenshot of the history panel?

  • The command should include the individual dataset number, example gx_get(12).
  • The active history should contain that individual dataset somewhere – it could be a hidden dataset nested within a collection. Try to capture the number and datatype.