I was advised to use $GALAXY_SLOTS variable in order to obtain number of processor cores. Workflow automation? - #2 by mvdbeek But when i print this variable in the tools, i get exactly one despite i have 16 - 48 logical processors.
Why it is not set automatically? E. g why not add
elif [ `nproc` > 0 ]; then GALAXY_SLOTS=`nproc`
into /data/galaxy/lib/galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh ?