Hi, we have a local install of Galaxy running on a MacPro 2010 with an 8-core Xeon and 28 GB of memory and several Tbs of SSD storage. It runs jobs about as fast as use.galaxy but it is only using one of the processors, but with multithreading. The programs used are:
concat, trimmomatic, fastqc, hisat2, and featureCounts.
Can anyone advise about the best strategy to use more of the processors?
Thanks for the help.