Gemini query empty.

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1

Hi, I am loading the Gemini load file into Gemini query in “Insert Region filter” section with chromosome number and Genomic coordinates.
All the queries are returned with columns name only.

|gene|chrom|start|end|ref|alt|impact|impact_severity|max_aaf_all|rs_ids

Any idea why this might be happening?

Am I doing anything wrong?

Please advice.

Thank you.

Cheers,
Shuchi.

2

Hi @Shuchi,
thanks for the report; you are right, it seems that there’s a bug in that tool. I’m reviewing it.

Regards

3

The fixed version will be available in the next days; could you meanwhile use Advanced query construction? You need to use an expression with the following pattern:

SELECT chrom, start, end, ref, alt, gene, impact FROM variants WHERE chrom = 'chr1' AND start >= 0 AND end <= 13327

Regards

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