How to calculate allelic imbalance in usegalaxy

I have a rnaseq data, i did the variant calling by using FreeBayes and question is how i can do allelic imbalance in SNP position in vcf file?

Hi @agrieng3,
I recommend you to have a look at variant analysis tutorials. Let me know if it doesn’t solve your doubts.


Hi Agrieng3, could you share your pipeline for variants calling from RANseq data? Were you able to perform everything on Galaxy?