How to calculate allelic imbalance in usegalaxy

agrieng3 · February 12, 2021, 2:34pm

I have a rnaseq data, i did the variant calling by using FreeBayes and question is how i can do allelic imbalance in SNP position in vcf file?
tx

gallardoalba · February 12, 2021, 6:44pm

Hi @agrieng3,
I recommend you to have a look at variant analysis tutorials. Let me know if it doesn’t solve your doubts.

Regards

Magronotturno · March 17, 2021, 9:00am

Hi Agrieng3, could you share your pipeline for variants calling from RANseq data? Were you able to perform everything on Galaxy?

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