I am using the main galaxy server at https://usegalaxy.org/
I have a collection of paired-end RNA-seq data with 30 pairs in it. With just this collection and a few other files, my storage usage sits at 5% (although, I suspect this may be incorrect given the size of the collection?). When I try to run cutadapt on this dataset, the storage usage begins to move up, far past what I would expect it to given that it can only be making the files smaller. After only a few pairs are completed, I start getting a “No space left on device” error. Even stranger, one pair will fail to run due to this error, but the next 10 will complete successfully. Then a couple more will fail due to the same error. When I let it run completely, it finishes at about 80% storage used. When run multiple times, different pairs fail each time.
I know something must be going on, but I cannot figure it out. Earlier today I had the entire collection run through cutadapt successfully, but I purged it because it wasn’t working with downstream software.
Finally, I wanted to mention that running the data as “multiple datasets” rather than “dataset collection” seems to function as intended. However, I lose the organization of the collection in this case, so I’d like to be able to run it as it stands now.
Any input is appreciated!