Hi team, I try many times, but I don’t know how to use online reference genome. When I use bwa-mem. If use own upload fasta. bwa-mem will index fasta every time. Could you told me how to fix it. Very thank you, Jacky

Ah, I think I figured it out =) I got it working by installing data_manager_all_fasta_path first: https://toolshed.g2.bx.psu.edu/repository?repository_id=0a5e20872a520157 After installing you have a new data manager and trough this one you can add your fasta file. I only filled in the path field f…

local machine can't use reference genome

usegalaxy.org support

jennaj February 27, 2020, 9:32pm 5

Also see:

Indexing reference genomes with Data Managers: Resources, tutorials, troubleshooting
Custom genome help and troubleshooting plus where to find HISAT2 alignment statistics

3 Likes

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local machine can't use reference genome

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