Hi @ZAYNE
Yes, there is at least Flye. Find this and tools under the “Assembly” tool group at any of the UseGalaxy.* servers.
Full options
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Find publications that cover analysis methods you’d like to follow, use comparable tools that Galaxy hosts, and create a workflow for batch analysis.
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Review public Galaxy servers that have an analysis domain focus on Metagenomics. Search here: Galaxy Platform Directory: Servers, Clouds, and Deployable Resources - Galaxy Community Hub
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Adapt the methods in our tutorials here
Metagenomics topic
PacBio search – the first currently listed covers assembly
Hope that helps to get your started. Please ask a new question if you need more help with any specific tool.