Good day everybody.
I am going to need to quality check & assemble raw data of paired reads (R1/R2 fastq.gz) into a bacterial genome (from the Pseudomonas genus). I would like to know if I can do this through Galaxy, without resorting to Linux & local installation of programs.
Could anybody suggest a sensible workflow of programs to use to this end from the myriads available in the Galaxy page? I get lost with so much choice…
Or would unicycler (for example) be enough to end up with a set of contigs?
Thank you for your patience. Regards.
Hi @pdemarco
the short answer is Yes. Please have a look at relevant tutorials at: Galaxy Training!
Kind regards,
Igor
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