Hey there… I have a bacterial genome NGS reads please help me to assemble these reads for further process
Good day Waqas. I recommend using Torsten Seeman’s Shovill tool - this is a wrapper around SPAdes and does a very good job with most microbial genomes. Also note that the Microbinfie Podcast discusses Microbial Genome Assembly in episodes 19, 20 and 22. All of these are worth a listen.