Hello community,
Are there a tutorial on Galaxy Training! describing rules to do multi GSEA with main specifications and “how not to do” recomendations?
The GTN resources are for training, so are mostly a “how to” sort of presentation. For what you are looking for, try the Bioconductor package vignettes instead. → https://www.bioconductor.org/
They also have a support forum where corner cases are discussed. And if there is a special usage, you can do that inside of an R environment from Galaxy, too, and move data between the these.
Hope this helps! 
Are you referring to the tool multiGSEA?
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