I’ve initialized a Galaxy instance on aws and am an admin on there. I am wondering how to parallelize the use of some tools on there. For example tophat2 has an option -p where on the command line it allows for parallel processing but that option is not one of the options that can be configured in …

Yes, you can edit the file. You will need to create a new destination with the number of cores you want set. Something like: <destination id="slurm_cluster_cpu16" runner="slurm"> <param id="nativeSpecification">--nodes=1 --ntasks=16</param> </destination> The default ca…

multithreading and parallel processing files

Hiba_Shaban December 19, 2018, 7:38pm 10

Thank you @enis and @jxtx, it worked.

3 Likes

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multithreading and parallel processing files

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