I’ve initialized a Galaxy instance on aws and am an admin on there.
I am wondering how to parallelize the use of some tools on there. For example tophat2 has an option -p where on the command line it allows for parallel processing but that option is not one of the options that can be configured in the User Interface tool. Is there a way around this?
There is a notification on the homepage of Cloudman UI that says this version of Galaxy has configured some tools to run on 4 cores in the file “job_conf.xml.cloud”, but is it possible to edit this file to use more processors?