Hello, I recently installed local Galaxy on a Xubuntu machine (most recent version 19.05). I setup admin user correctly, and when I tried to install tools from the default tool shed, I always get an error. For some reason I cannot clone the repository for the installation, giving an “abort: connection ended unexpectedly” with an error code 255.
I tried with different tools and got the same result. I don’t know where to start looking for possible causes, so if anyone may have some suggestions, I will be happy to provide more information. Thank you!
You should allow Galaxy accessing the internet.
You could try to modify the file “galaxy/config/galaxy.yml” by changing the line “http: 127.0.0.1:8080” with “http:0.0.0.0:8080” or another port like “http:0.0.0.0:7070”.
That settings affects where Galaxy listens for traffic, it has nothing to do with Galaxy being able to access internet. Even local Galaxies with private IP like 127.0.0.1 can install tools from the Toolshed.
Hi
I have the same issue still with Galaxy 20.05:
galaxy.tool_shed.util.hg_util ERROR 2020-08-06 08:26:24,130 [p:4820,w:1,m:0] [uWSGIWorker1Core0] Error cloning repository: Command ‘[‘hg’, ‘clone’, ‘-r’, ‘21’, ‘https://toolshed.g2.bx.psu.edu/repos/devteam/fastqc’, ‘/Users/mushal/software/galaxy/database/shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/fastqc/e7b2202befea/fastqc’]’ returned non-zero exit status 1.
Any help is appreciated. Thank you!