I have a question with bowtie2. When I search using a genome on the list, seems to be fine. But when using an .fna genome from ncbi or other, it gives me an error. Must be something I’m dojng wrong?

Welcome, @mycojon This FAQ has instructions for how to format a custom reference genome. FAQ: How to use Custom Reference Genomes? A **reference genome** contains the nucleotide sequence of the chromosomes, scaffolds, transcripts, or contigs for single species. It is representative of…

Reference Genome

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jennaj Split this topic January 29, 2024, 5:53pm 8

A post was split to a new topic: Tool request: resources

Topic		Replies	Views
Expanding the built-in reference genomes usegalaxy.eu support custom-genome , reference-annotation , reference-genome , custom-build	2	345	July 12, 2023
Bowtie 2 - in Workflow no custom reference genome available -- Solution: Create a Custom Build usegalaxy.eu support custom-genome , reference-annotation , reference-genome , custom-build	1	1154	August 27, 2019
Addition of reference genome: Phoenix dactylifera usegalaxy.org support database , custom-genome	4	949	February 7, 2019
Reference geneome usegalaxy.org support custom-genome , custom-build	1	439	August 10, 2021
Adding new Reference genomes to the DeepVariant deep learning-based variant caller usegalaxy.eu support custom-genome , mapping , transcriptomics , reference-annotation , reference-genome , custom-build , featurecounts	1	769	January 26, 2023

Reference Genome

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