Hello, I attempted to input two WGS data sets (two different sets of reads) and a reference genome from NCBI into the BWA-MEM2 tool. The job failed and resulting in the following messages: Execution resulted in the following messages: Fatal error: Exit code 1 () Tool generated the following stan…

Hi @edf393 The FAQs explain what you can do in general to continue working at a public Galaxy server. In short: use an indexed genome as the mapping target (bosTau8 instead) + split the query reads into a collection, run some QA, map, then merge the results. Or, you can consider setting up a priva…

Troubleshooting an error (exit code 1) when performing BWA-MEM2 on WGS data

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jennaj Split this topic September 20, 2023, 9:00pm 4

A post was split to a new topic: Troubleshooting BWA-MEM2 resources under Docker Galaxy

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Troubleshooting an error (exit code 1) when performing BWA-MEM2 on WGS data

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