Unable to login to http://localhost:8080/ after fresh install of Docker and Galaxy Windows 8

george.weingart · December 17, 2020, 7:42pm

Hello,
I installed yesterday Docker on my Windows 8 PC. I use Norton360 antivirus.
I then installed Galaxy.
I start Galaxy as follows:
docker run -d -p 8080:80 -p 8021:21 -p 8022:22 bgruening/galaxy-stable
The container creates, I wait a few minutes and I can see the logs
I try to connect to Galaxy using Chrome throught the addresses http://localhost:8080/ and http://127.0.0.1:8080 - in both cases I get

This site can’t be reached

127.0.0.1 refused to connect.
ERR_CONNECTION_REFUSED

Can you let me know what do I need to do to be able to access my Galaxy?
Enclosed the logs.
Thanks !
George Weingart

$ docker logs -f awesome_elgamal
Enable Galaxy reports authentification
Checking /export…
Disable Galaxy Interactive Environments. Start with --privileged to enable IE’s.
Starting postgres
postgresql: started
Checking if database is up and running
Traceback (most recent call last):
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/engine/base.py”, line 1248, in _execute_context
cursor, statement, parameters, context
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/engine/default.py”, line 590, in do_execute
cursor.execute(statement, parameters)
psycopg2.errors.UndefinedTable: relation “galaxy_user” does not exist
LINE 3: FROM galaxy_user
^

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
File “/usr/local/bin/check_database.py”, line 25, in
query.count()
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/orm/query.py”, line 3669, in count
return self.from_self(col).scalar()
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/orm/query.py”, line 3393, in scalar
ret = self.one()
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/orm/query.py”, line 3360, in one
ret = self.one_or_none()
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/orm/query.py”, line 3329, in one_or_none
ret = list(self)
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/orm/query.py”, line 3405, in iter
return self._execute_and_instances(context)
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/orm/query.py”, line 3430, in _execute_and_instances
result = conn.execute(querycontext.statement, self._params)
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/engine/base.py”, line 984, in execute
return meth(self, multiparams, params)
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/sql/elements.py”, line 293, in _execute_on_connection
return connection._execute_clauseelement(self, multiparams, params)
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/engine/base.py”, line 1103, in _execute_clauseelement
distilled_params,
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/engine/base.py”, line 1288, in execute_context
e, statement, parameters, cursor, context
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/engine/base.py”, line 1482, in handle_dbapi_exception
sqlalchemy_exception, with_traceback=exc_info[2], from=e
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/util/compat.py”, line 178, in raise
raise exception
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/engine/base.py”, line 1248, in _execute_context
cursor, statement, parameters, context
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/engine/default.py”, line 590, in do_execute
cursor.execute(statement, parameters)
sqlalchemy.exc.ProgrammingError: (psycopg2.errors.UndefinedTable) relation “galaxy_user” does not exist
LINE 3: FROM galaxy_user
^

[SQL: SELECT count(*) AS count_1
FROM (SELECT galaxy_user.id AS galaxy_user_id, galaxy_user.create_time AS galaxy_user_create_time, galaxy_user.update_time AS galaxy_user_update_time, galaxy_user.email A
S galaxy_user_email, galaxy_user.username AS galaxy_user_username, galaxy_user.password AS galaxy_user_password, galaxy_user.last_password_change AS galaxy_user_last_pass
word_change, galaxy_user.external AS galaxy_user_external, galaxy_user.form_values_id AS galaxy_user_form_values_id, galaxy_user.deleted AS galaxy_user_deleted, galaxy_us
er.purged AS galaxy_user_purged, galaxy_user.disk_usage AS galaxy_user_disk_usage, galaxy_user.active AS galaxy_user_active, galaxy_user.activation_token AS galaxy_user_a
ctivation_token
FROM galaxy_user
WHERE galaxy_user.email = %(email_1)s) AS anon_1]
[parameters: {‘email_1’: ‘admin@galaxy.org’}]
(Background on this error at: http://sqlalche.me/e/f405)
Waiting for database
Traceback (most recent call last):
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/engine/base.py”, line 1248, in _execute_context
cursor, statement, parameters, context
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/engine/default.py”, line 590, in do_execute
cursor.execute(statement, parameters)
psycopg2.errors.UndefinedTable: relation “galaxy_user” does not exist
LINE 3: FROM galaxy_user
^

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
File “/usr/local/bin/check_database.py”, line 25, in
query.count()
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/orm/query.py”, line 3669, in count
return self.from_self(col).scalar()
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/orm/query.py”, line 3393, in scalar
ret = self.one()
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/orm/query.py”, line 3360, in one
ret = self.one_or_none()
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/orm/query.py”, line 3329, in one_or_none
ret = list(self)
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/orm/query.py”, line 3405, in iter
return self._execute_and_instances(context)
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/orm/query.py”, line 3430, in _execute_and_instances
result = conn.execute(querycontext.statement, self._params)
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/engine/base.py”, line 984, in execute
return meth(self, multiparams, params)
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/sql/elements.py”, line 293, in _execute_on_connection
return connection._execute_clauseelement(self, multiparams, params)
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/engine/base.py”, line 1103, in _execute_clauseelement
distilled_params,
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/engine/base.py”, line 1288, in execute_context
e, statement, parameters, cursor, context
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/engine/base.py”, line 1482, in handle_dbapi_exception
sqlalchemy_exception, with_traceback=exc_info[2], from=e
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/util/compat.py”, line 178, in raise
raise exception
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/engine/base.py”, line 1248, in _execute_context
cursor, statement, parameters, context
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/engine/default.py”, line 590, in do_execute
cursor.execute(statement, parameters)
sqlalchemy.exc.ProgrammingError: (psycopg2.errors.UndefinedTable) relation “galaxy_user” does not exist
LINE 3: FROM galaxy_user
^

[SQL: SELECT count(*) AS count_1
FROM (SELECT galaxy_user.id AS galaxy_user_id, galaxy_user.create_time AS galaxy_user_create_time, galaxy_user.update_time AS galaxy_user_update_time, galaxy_user.email A
S galaxy_user_email, galaxy_user.username AS galaxy_user_username, galaxy_user.password AS galaxy_user_password, galaxy_user.last_password_change AS galaxy_user_last_pass
word_change, galaxy_user.external AS galaxy_user_external, galaxy_user.form_values_id AS galaxy_user_form_values_id, galaxy_user.deleted AS galaxy_user_deleted, galaxy_us
er.purged AS galaxy_user_purged, galaxy_user.disk_usage AS galaxy_user_disk_usage, galaxy_user.active AS galaxy_user_active, galaxy_user.activation_token AS galaxy_user_a
ctivation_token
FROM galaxy_user
WHERE galaxy_user.email = %(email_1)s) AS anon_1]
[parameters: {‘email_1’: ‘admin@galaxy.org’}]
(Background on this error at: http://sqlalche.me/e/f405)
Waiting for database
Traceback (most recent call last):
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/engine/base.py”, line 1248, in _execute_context
cursor, statement, parameters, context
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/engine/default.py”, line 590, in do_execute
cursor.execute(statement, parameters)
psycopg2.errors.UndefinedTable: relation “galaxy_user” does not exist
LINE 3: FROM galaxy_user
^

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
File “/usr/local/bin/check_database.py”, line 25, in
query.count()
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/orm/query.py”, line 3669, in count
return self.from_self(col).scalar()
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/orm/query.py”, line 3393, in scalar
ret = self.one()
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/orm/query.py”, line 3360, in one
ret = self.one_or_none()
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/orm/query.py”, line 3329, in one_or_none
ret = list(self)
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/orm/query.py”, line 3405, in iter
return self._execute_and_instances(context)
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/orm/query.py”, line 3430, in _execute_and_instances
result = conn.execute(querycontext.statement, self._params)
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/engine/base.py”, line 984, in execute
return meth(self, multiparams, params)
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/sql/elements.py”, line 293, in _execute_on_connection
return connection._execute_clauseelement(self, multiparams, params)
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/engine/base.py”, line 1103, in _execute_clauseelement
distilled_params,
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/engine/base.py”, line 1288, in execute_context
e, statement, parameters, cursor, context
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/engine/base.py”, line 1482, in handle_dbapi_exception
sqlalchemy_exception, with_traceback=exc_info[2], from=e
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/util/compat.py”, line 178, in raise
raise exception
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/engine/base.py”, line 1248, in _execute_context
cursor, statement, parameters, context
File “/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/engine/default.py”, line 590, in do_execute
cursor.execute(statement, parameters)
sqlalchemy.exc.ProgrammingError: (psycopg2.errors.UndefinedTable) relation “galaxy_user” does not exist
LINE 3: FROM galaxy_user
^

[SQL: SELECT count(*) AS count_1
FROM (SELECT galaxy_user.id AS galaxy_user_id, galaxy_user.create_time AS galaxy_user_create_time, galaxy_user.update_time AS galaxy_user_update_time, galaxy_user.email A
S galaxy_user_email, galaxy_user.username AS galaxy_user_username, galaxy_user.password AS galaxy_user_password, galaxy_user.last_password_change AS galaxy_user_last_pass
word_change, galaxy_user.external AS galaxy_user_external, galaxy_user.form_values_id AS galaxy_user_form_values_id, galaxy_user.deleted AS galaxy_user_deleted, galaxy_us
er.purged AS galaxy_user_purged, galaxy_user.disk_usage AS galaxy_user_disk_usage, galaxy_user.active AS galaxy_user_active, galaxy_user.activation_token AS galaxy_user_a
ctivation_token
FROM galaxy_user
WHERE galaxy_user.email = %(email_1)s) AS anon_1]
[parameters: {‘email_1’: ‘admin@galaxy.org’}]
(Background on this error at: http://sqlalche.me/e/f405)
Waiting for database
Database connected
Starting cron
cron: started
Starting ProFTP
proftpd: started
Starting Galaxy reports webapp
reports: started
Starting nodejs
galaxy:galaxy_nodejs_proxy: started
Starting condor
condor: started
Starting slurmctld
Starting slurmd
Creating admin user admin with key fakekey and password password if not existing
==> /home/galaxy/logs/handler0.log <==
galaxy.workflow.scheduling_manager INFO 2020-12-17 18:52:14,638 No workflow schedulers plugin config file defined, using default scheduler.
galaxy.workflow.scheduling_manager DEBUG 2020-12-17 18:52:14,638 Starting workflow schedulers
galaxy.queue_worker INFO 2020-12-17 18:52:14,688 Binding and starting galaxy control worker for handler0
galaxy.queue_worker INFO 2020-12-17 18:52:14,722 Queuing async task rebuild_toolbox_search_index for handler0.
galaxy.model.database_heartbeat DEBUG 2020-12-17 18:52:14,808 handler0 is config watcher
galaxy.util.watcher DEBUG 2020-12-17 18:52:14,843 Watching for changes in directory (recursively): /galaxy-central/tool-data
galaxy.app INFO 2020-12-17 18:52:14,976 Galaxy app startup finished (21130.909 ms)
galaxy.web_stack INFO 2020-12-17 18:52:14,976 Galaxy server instance ‘handler0’ is running
galaxy.queue_worker INFO 2020-12-17 18:52:14,986 Instance ‘handler0’ received ‘rebuild_toolbox_search_index’ task, executing now.
galaxy.queue_worker DEBUG 2020-12-17 18:52:14,986 App is not a webapp, not building a search index

==> /home/galaxy/logs/handler1.log <==
galaxy.workflow.scheduling_manager INFO 2020-12-17 18:52:24,026 No workflow schedulers plugin config file defined, using default scheduler.
galaxy.workflow.scheduling_manager DEBUG 2020-12-17 18:52:24,026 Starting workflow schedulers
galaxy.queue_worker INFO 2020-12-17 18:52:24,063 Binding and starting galaxy control worker for handler1
galaxy.queue_worker INFO 2020-12-17 18:52:24,082 Queuing async task rebuild_toolbox_search_index for handler1.
galaxy.model.database_heartbeat DEBUG 2020-12-17 18:52:24,148 handler1 is config watcher
galaxy.util.watcher DEBUG 2020-12-17 18:52:24,190 Watching for changes in directory (recursively): /galaxy-central/tool-data
galaxy.app INFO 2020-12-17 18:52:24,233 Galaxy app startup finished (11560.530 ms)
galaxy.web_stack INFO 2020-12-17 18:52:24,234 Galaxy server instance ‘handler1’ is running
galaxy.queue_worker INFO 2020-12-17 18:52:24,263 Instance ‘handler1’ received ‘rebuild_toolbox_search_index’ task, executing now.
galaxy.queue_worker DEBUG 2020-12-17 18:52:24,263 App is not a webapp, not building a search index

==> /home/galaxy/logs/reports.log <==
galaxy.web.framework.base DEBUG 2020-12-17 18:52:21,580 Enabling ‘history’ controller, class: History
galaxy.web.framework.base DEBUG 2020-12-17 18:52:21,590 Enabling ‘users’ controller, class: Users
galaxy.web.framework.base DEBUG 2020-12-17 18:52:21,603 Enabling ‘tools’ controller, class: Tools
galaxy.webapps.util DEBUG 2020-12-17 18:52:21,609 Enabling ‘paste.httpexceptions’ middleware
galaxy.webapps.util DEBUG 2020-12-17 18:52:21,642 Enabling ‘RecursiveMiddleware’ middleware
galaxy.webapps.util DEBUG 2020-12-17 18:52:21,661 Enabling ‘ErrorMiddleware’ middleware
galaxy.webapps.util DEBUG 2020-12-17 18:52:21,670 Enabling ‘TransLogger’ middleware
galaxy.webapps.util DEBUG 2020-12-17 18:52:21,675 Enabling ‘XForwardedHostMiddleware’ middleware
Starting server in PID 563.
serving on http://127.0.0.1:9001

==> /home/galaxy/logs/slurmctld.log <==
[2020-12-17T18:52:43.624] No trigger state file (/tmp/slurm/trigger_state.old) to recover
[2020-12-17T18:52:43.624] _preserve_plugins: backup_controller not specified
[2020-12-17T18:52:43.624] Reinitializing job accounting state
[2020-12-17T18:52:43.624] cons_res: select_p_reconfigure
[2020-12-17T18:52:43.624] cons_res: select_p_node_init
[2020-12-17T18:52:43.624] cons_res: preparing for 1 partitions
[2020-12-17T18:52:43.624] Running as primary controller
[2020-12-17T18:52:43.641] No parameter for mcs plugin, default values set
[2020-12-17T18:52:43.641] mcs: MCSParameters = (null). ondemand set.
[2020-12-17T18:52:46.664] SchedulerParameters=default_queue_depth=100,max_rpc_cnt=0,max_sched_time=2,partition_job_depth=0,sched_max_job_start=0,sched_min_interval=2

==> /home/galaxy/logs/slurmd.log <==
[2020-12-17T18:52:44.740] error: Domain socket directory /var/spool/slurmd: No such file or directory
[2020-12-17T18:52:44.741] Message aggregation disabled
[2020-12-17T18:52:44.741] CPU frequency setting not configured for this node
[2020-12-17T18:52:44.839] slurmd version 17.11.2 started
[2020-12-17T18:52:44.856] slurmd started on Thu, 17 Dec 2020 18:52:44 +0000
[2020-12-17T18:52:44.859] CPUs=1 Boards=1 Sockets=1 Cores=1 Threads=1 Memory=985 TmpDisk=18275 Uptime=10758 CPUSpecList=(null) FeaturesAvail=(null) FeaturesActive=(null)

==> /home/galaxy/logs/uwsgi.log <==
galaxy.web_stack DEBUG 2020-12-17 18:52:26,867 [p:644,w:1,m:0] [MainThread] Calling postfork function:
galaxy.web_stack DEBUG 2020-12-17 18:52:26,870 [p:644,w:1,m:0] [MainThread] Calling postfork function: <function postfork_setup at 0x7fa776f5c2f0>
galaxy.web_stack INFO 2020-12-17 18:52:26,871 [p:644,w:1,m:0] [MainThread] Galaxy server instance ‘main.web.1’ is running
Starting server in PID 540.
serving on http://127.0.0.1:8080
serving on uwsgi://127.0.0.1:4001
galaxy.queue_worker INFO 2020-12-17 18:52:26,991 [p:644,w:1,m:0] [Thread-1] Instance ‘main.web.1’ received ‘rebuild_toolbox_search_index’ task, executing now.
galaxy.tools.search DEBUG 2020-12-17 18:52:26,991 [p:644,w:1,m:0] [Thread-1] Starting to build toolbox index.
galaxy.tools.search DEBUG 2020-12-17 18:52:27,113 [p:644,w:1,m:0] [Thread-1] Toolbox index finished (122.256 ms)
galaxy.tools.search DEBUG 2020-12-17 18:52:27,689 [p:647,w:2,m:0] [Thread-1] Toolbox index finished (836.592 ms)

==> /home/galaxy/logs/handler0.log <==
galaxy.model.database_heartbeat DEBUG 2020-12-17 18:53:14,860 handler0 is not config watcher

==> /home/galaxy/logs/handler1.log <==
galaxy.model.database_heartbeat DEBUG 2020-12-17 18:53:24,201 handler1 is not config watcher

==> /home/galaxy/logs/slurmctld.log <==
[2020-12-17T18:57:43.858] error: Could not open job state file /tmp/slurm/job_state: No such file or directory
[2020-12-17T18:57:43.859] error: NOTE: Trying backup state save file. Jobs may be lost!
[2020-12-17T18:57:43.859] No job state file (/tmp/slurm/job_state.old) found

Diana · March 31, 2022, 12:21pm

I got the same error from a fresh docker run:

docker run -d -p 8080:80 -p 8021:21 -p 8022:22 bgruening/galaxy-stable

Also:

docker run -it -p 9080:80 -p 9081:21 -p 9082:22 quay.io/bgruening/galaxy

Checking if database is up and running
Traceback (most recent call last):
  File "/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1284, in _execute_context
    cursor, statement, parameters, context
  File "/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/engine/default.py", line 590, in do_execute
    cursor.execute(statement, parameters)
psycopg2.errors.UndefinedTable: relation "galaxy_user" does not exist
LINE 3: FROM galaxy_user 
             ^


The above exception was the direct cause of the following exception:

Traceback (most recent call last):
  File "/usr/local/bin/check_database.py", line 25, in <module>
    query.count()
  File "/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/orm/query.py", line 3749, in count
    return self.from_self(col).scalar()
  File "/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/orm/query.py", line 3469, in scalar
    ret = self.one()
  File "/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/orm/query.py", line 3436, in one
    ret = self.one_or_none()
  File "/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/orm/query.py", line 3405, in one_or_none
    ret = list(self)
  File "/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/orm/query.py", line 3481, in __iter__
    return self._execute_and_instances(context)
  File "/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/orm/query.py", line 3506, in _execute_and_instances
    result = conn.execute(querycontext.statement, self._params)
  File "/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1020, in execute
    return meth(self, multiparams, params)
  File "/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/sql/elements.py", line 298, in _execute_on_connection
    return connection._execute_clauseelement(self, multiparams, params)
  File "/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1139, in _execute_clauseelement
    distilled_params,
  File "/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1324, in _execute_context
    e, statement, parameters, cursor, context
  File "/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1518, in _handle_dbapi_exception
    sqlalchemy_exception, with_traceback=exc_info[2], from_=e
  File "/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/util/compat.py", line 178, in raise_
    raise exception
  File "/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1284, in _execute_context
    cursor, statement, parameters, context
  File "/galaxy_venv/lib/python3.7/site-packages/sqlalchemy/engine/default.py", line 590, in do_execute
    cursor.execute(statement, parameters)
sqlalchemy.exc.ProgrammingError: (psycopg2.errors.UndefinedTable) relation "galaxy_user" does not exist
LINE 3: FROM galaxy_user 
             ^

jennaj · March 31, 2022, 4:18pm

Hi @Diana

Would you please explain a bit more about your configuration?

What version of the Docker are you running? The latest is recommended.
What is your OS + version?
Is this a new installation or an upgrade? If the second, what was the original version?
Summary of steps that you have done so far

References:

Let’s start there

Diana · March 31, 2022, 6:06pm

Thanks for your answer.
After 4 hours dealing with this, I was able to get the Galaxy screen.

I am using Docker version 20.10.7, build 20.10.7-0ubuntu5~20.04.2 and Ubuntu 20 64bits.
I had to reinstall everything from scratch multiple times and it finally worked.

Now I am trying to enable the Google login in the container, but I am not getting the login button. (Maybe this should be a different issue).
This is an extract of my galaxy.yml, and I have configured the other two xml files:

...
galaxy:
  enable_oidc: true
  oidc_config_file: config/oidc_config.xml
  oidc_backends_config_file: config/oidc_backends_config.xml

Where can I see a file with errors so I can investigate the problem? The files in /home/galaxy/logs don’t show anything unusual.

jennaj · March 31, 2022, 6:44pm

Maybe advanced logging will help? GitHub - bgruening/docker-galaxy-stable: 🐳📊📚 Docker Images tracking the stable Galaxy releases.

Diana · April 20, 2022, 5:59pm

Thanks. Is anyone able to give me more details on where to look?

I have already activated the advance logs but still I can’t see any related error in /home/galaxy/logs/*.log

Also, I cannot see any indication of Galaxy using OIDC or trying to reach Google. Where can I find this sort of debug messages?

Diana · April 22, 2022, 4:19pm

I think I will open a new thread, as it is actually a different issue

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Error: Cannot open an HTTP server: socket.error reported errno.ENOTSUP (95) galaxy-local , galaxy-docker	3	1692	June 21, 2023

Unable to login to http://localhost:8080/ after fresh install of Docker and Galaxy Windows 8

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