circular RNA identification

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1

Hi,
I need to analyze RNAseq data for the expression of circularRNA. Is there a tool for this kind of analysis?
thanks a lot

2

Hello Manu,

I am also in need of circRNA expression analysis from RNA-Seq data. Please, I wish to know if you have resolved this issue and kindly share your opinion with me. Hoping for your kind response. Thank you so much.

Regards,

3

Hi @Phizor123,
have you in mind any specific tool? If not, I recommend you have a look at this publication in order to provide us with some suggestions about the tools that best suit your needs.

Regards

4

Hello @gallardoalba,

Thank you so much for your kind response. Some of the most popularly used tool for circular RNA sequencing data analysis are

  1. Find_circ
  2. CIRCexplorer2
  3. ciri2

Hoping for your subsequent kind response on this issue. Thank you so much once again.

Best Regards,

5

Ok, I’ll work on it, but probably won’t be available until July 11th.

Regards

6

July is okay. Thank you so much for the effort and time you will expend on this. It will be great and highly useful in circular RNA field.

Regards,

7

Hello @gallardoalba ,

Please, I wish to softly ask if you have an update on the circRNA analysis tool. Hoping for your kind response. Thank you so much.

8

HI @Phizor123,
I started working on it, but it is not finished yet sorry. I’ll provide you with feedback as soon as it is available.

Regards

9

Hello @gallardoalba ,

Thank you so much for the your kind effort and response.

Regards,

10

Hello @gallardoalba ,

Please, I just want to softly check with you about our last discussion concerning the circRNA analysis tool for GALAXY. Hoping for your kind response. Thank you so much.

Regards,

11

Hi @Phizor123,
I’ll try to make it available this week. Sorry for the delay.

Regards

12

Hi @Phizor123,
I opened a PR in order to include the tool (CIRCexplorer2):

It will be available as soon as it is accepted (probably the next week).

Regards

13

Hello @gallardoalba ,

Thank you so much for this very very valuable effort. I am sure this contribution will benefit a lot of circRNA researchers worldwide ones it is added to GALAXY. Thanks once again.

Regards.

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