Dependencies could not resolved

[vmevada102]

I am also facing the same problem, After upload of file suddenly in history it shown in Redcolor.

[vmevada102]

I have recently installed latest version of Galaxy, Everything installed properly.

However, i am not able to resolve the dependency .. Please suggest me to correct it properly

[jennaj]

Hi @vmevada102

Hopefully we can help!

We have resources here, including tutorials, to help you to get a local server up and running. The Docker version is much simpler since much of the administrative set up is already done for you, making a good choice for some.

@jennaj

Local Galaxy

A local Galaxy server is a choice for personal use, and can be scaled to support multiple users.

Your service can be hosted publicly or privately. Connect to local, institutional, or commercial cloud computing resources and customize your usage policies.

Local Galaxy

• Training Network Galaxy server administration training
• Technical Documentation Galaxy releases, plus Admin and Development docs
• Open-source code base GalaxyProject Github repositories
• galaxyproject/admins chat at https://matrix.to/#/#galaxyproject_admins:gitter.im
• galaxyproject/admins dev at https://matrix.to/#/#galaxyproject_dev:gitter.im

Docker Galaxy

Much comes pre-configured, and common administrative tasks are simpler to implement and maintain. Be sure to review the repository’s README for these custom instructions.

Docker Galaxy

• Galaxy Docker - Galaxy Community Hub
• bgruening/docker-galaxy-stable chat at https://matrix.to/#/#bgruening_docker-galaxy-stable:gitter.im

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For problems with tool installations and dependencies, I would suggest starting here:

• How to find the server logs → Galaxy Troubleshooting
• Then, how to set up your environment for the specific task you are showing as unresolved. → Dependency Resolvers in Galaxy — Galaxy Project 24.2.1.dev0 documentation
• You can also use this tool to sort of automate the process. → Hands-on: Galaxy Tool Management with Ephemeris / Galaxy Tool Management with Ephemeris / Galaxy Server administration

In short, sometimes reinstalling is enough. After that, review your job logs. Maybe there is something special about those tools? Are they from the Tool Shed? Where did the list of tools to install come from?

You can post back the content of logs (redact credentials), or a specific tool that has a problem? More details about your server would help, too. Which exact version, where did you source it, how did you start Galaxy the first time, any warnings from the start up scripts, those sort of context details.

Let’s start there, thanks!

[jennaj]

I merged in the Upload problem since these are likely related. Let’s keep it all together since some initial basic configuration seems to be the root issue.

I’m curious about what messages may be displayed in that red dataset (expand to see these, then click into the job details logs). You can also check your server logs to see if there are more details. This is usually a Python versioning problem, which could also be the issue with the dependency resolver when installing tools, but the log will have a specific message about that. If you post it back, we can confirm and offer advice about what to do next.