DexSeq Count issue -- Job failing for exceeding memory resources: input problem or actually too large to execute at public server

I am trying to generate count files using DEXSeq-count and I keep getting an error message saying that there is not sufficient memory. The alignment files that I have are large (~10 GB) and I think that might be part of the issue but I can’t change the memory allocation so I am not sure how to get around this issue. Does anybody have a suggestion?

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Hello @mjgage

The job might be failing for resources or there is an input problem.

This FAQ explains how to check for input problems and what to do if the server you are working at does not have the resources to process large data:

More help: Troubleshooting resources for errors or unexpected results