Hi everyone, when trying to import a dataset (large .csv file) from my active galaxy history to Rstudio with gx_get(19056)
I get the following error:
DEBUG:root:Host IP determined to be b’172.17.0.1\n’
DEBUG:root:TestURL url=https://usegalaxy.eu obj=False
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): usegalaxy.eu:443
DEBUG:urllib3.connectionpool:https://usegalaxy.eu:443 “GET /api/histories?key=###HTTP/1.1” 200 None
DEBUG:root:TestURL url=https://usegalaxy.eu state=success
DEBUG:root:Downloading gx=GalaxyInstance object for Galaxy at https://usegalaxy.eu history=0cd1246fe45a8830 dataset=19056
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): usegalaxy.eu:443
DEBUG:urllib3.connectionpool:https://usegalaxy.eu:443 “GET /api/histories/0cd1246fe45a8830/contents?key=###HTTP/1.1” 200 None
Traceback (most recent call last):
File “/usr/local/bin/get”, line 19, in
results = get( args.id, args.identifier_type, args.history_id )
File “/usr/local/lib/python3.8/dist-packages/galaxy_ie_helpers/init.py”, line 199, in get
datatypes_all.append({ds[identifier_type]: ds[‘extension’] for ds in history})
File “/usr/local/lib/python3.8/dist-packages/galaxy_ie_helpers/init.py”, line 199, in
datatypes_all.append({ds[identifier_type]: ds[‘extension’] for ds in history})
KeyError: ‘extension’
The dataset loads normally in my locally installed Rstudio.
Any suggestions?