I have noticed that many new reference genomes have appeared in RNA STAR. Would be great if Dog ((UU_Cfam_GSD_1.0/canFam4) Mar.2020) could be added to this collection, then I can complete all my mappings with the same pipeline.
The EU team will be back on their tomorrow, and can comment about what they can do now. ping @wm75@gallardoalba
The alternative is to get the genome fasta from the UCSC downloads area into Galaxy, then use it as a custom reference genome. The EU server can usually process the largest custom genomes of the three UseGalaxy* servers. But let’s see what they state as the best way to proceed.