GTDB-Tk Classify genomes error type 3

[Jesus_Tapia]

error in GTDB-tk classifier

usage: gtdbtk
              {de_novo_wf,classify_wf,identify,align,infer,classify,root,decorate,infer_ranks,ani_rep,test,trim_msa,remove_labels,convert_to_itol,convert_to_species,export_msa,check_install} ...
gtdbtk: error: unrecognized arguments: --skip_ani_screen

someone else has this problem?

[jennaj]

Welcome @Jesus_Tapia

We can probably help! A few questions to get started:

1. Where are you working in Galaxy? The server URL is at the very top of your browser window.

2. Then, which version of the tool are you running? The full tool name and version will be at the top of the tool form.

3. Finally, what parameters are you using with the tool? You can screenshot the Job Information Details page table.

All can be copy/pasted back in your reply. Or, you are welcome to share back your history that contains the error since that would contain all the details above, plus the full job logs.

How to get faster help with your question

How to get faster help with your question We can’t help without details! Consider Sharing your History or posting screenshots of your Job Information Details page. Confirm the Server URL (your web browser at the top!) and any Tutorial links involved.

Maybe something changed or there is another way to run the tool to get the results you want. We can investigate!

[jpeasari]

I got the same error. Could you please investigate this issue ?

Job Information:

-John

[wm75]

There is this report from another user that, unfortunately, got no attention before.

It explains the issue with the latest version of the tool and provides a workaround until the Galaxy tool receives a fix.

Thanks for both your reports @Jesus_Tapia and @jpeasari

[jpeasari]

Hi @wm75 ,

Thank you for the update.

-John

[jennaj]

FYI I’m going to make this topic as “answered” so the redirect to the other topic in @wm75 's reply is linked from the bottom of the tool form. Then we can close all of these out once corrected.