I have a VCF file (format = vcf_bgzip) and I would like to obtain multiple separate VCF files by chromosome. I would appreciate any help into how to achieve this using Galaxy. Here is a sample file:
##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##contig=<ID=1,length=249250621>
##contig=<ID=10,length=135534747>
## several other hashes and text
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SampleName
1 69869 rs548049170 A . . . . GT 0/0
1 565508 rs9283150 T . . . . GT ./.
1 727841 rs116587930 C . . . . GT 0/0
1 752721 rs3131972 T G . . . GT 1/1