How to download more SBML models from the BIGG database and import them into the workflow?

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In the module of ‘RetroSynthesis’ , how to download more SBML models from the BIGG database and import them into the workflow? How to download models from BIGG? How to import these models into the workflow?

Hi @7ok_7ik

Does this part of a GTN tutorial help?

Go to the top level of the Category to find all three tutorials. These walk through the protocol from the start.

The tutorial only lists a Docker image, and not a public Galaxy server, but this one appears to host it. I checked and the tool you are using is available.

Please give those a review and let us know if it helps! :slight_smile: If you have more questions, please clarify where you are working (server URL, etc) and we can try to bring in more people familiar with the tools as needed.

To @jennaj jennaj:
How can I manually download a model from the BIGG database to use in my workflow? The chassis organism I need cannot be found in the ‘Pick SBML Model’ module, but it is available in the BIGG database.

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Hi @7ok_7ik

Thanks for clarifying! The analysis domain is specific to just that server from what I know. So, for the adding new indexes part, try using the support email address in the directory card above. Maybe they can update the indexes, or there is another way to do this directly.

If you want to come back and post what worked later on, that would be great. :slight_smile: