htseq-count configuration problem

[jennaj]

Hi,

@pa.saunders

samtools: error while loading shared libraries: libcrypto.so.1.0.0: cannot open shared object file: No such file or directory

This means that the dependencies did not install correctly. Please see this post for prior Q&A about the same issue:

Indexing reference genomes with Data Managers: Resources, tutorials, troubleshooting

Hi, I’m attempting to run HISAT2 on paired RNAseq data. I have run it successfully previously on the main server using the mm10 built-in reference genome, however, I am now using a local server and the built-in reference genomes have apparently not been included in the set-up. I’m hoping to get some assistance on how to obtain the right reference genome file for mm10 installed, or even better how to update the local server so the same built-in reference genome will be available as in the main s…