Hello,
I’m fairly new to the whole computing stuff and have some problem installing the local galaxy so I can get admin control and install the tool shed.
I’ve followed the tutorial (Get Galaxy) step by step. After running
$ sh run.sh, I got:
…(skip)…
Traceback (most recent call last):
File “”, line 1, in
File “/Users/Jonh/Documents/galaxy/lib/galaxy/dependencies/init.py”, line 255, in optional
conditional = ConditionalDependencies(config_file)
File “/Users/Jonh/Documents/galaxy/lib/galaxy/dependencies/init.py”, line 36, in init
self.config = load_app_properties(config_file=self.config_file)
File “/Users/Jonh/Documents/galaxy/lib/galaxy/util/properties.py”, line 79, in load_app_properties
properties = read_properties_from_file(config_file, config_section)
File “/Users/Jonh/Documents/galaxy/lib/galaxy/util/properties.py”, line 109, in read_properties_from_file
properties.update(raw_properties.get(config_section) or {})
ValueError: dictionary update sequence element #0 has length 1; 2 is required
I’m not sure what to do from here, and the terminal said the connection is refused when I tried to connect to http://localhost:8080/ as well.
(base) THYeh-mac:galaxy Jonh$ [uwsgi-http] unable to connect() to node “127.0.0.1:57382” (0 retries): Connection refused
[uwsgi-http] unable to connect() to node “127.0.0.1:57382” (1 retries): Connection refused
[uwsgi-http] unable to connect() to node “127.0.0.1:57382” (2 retries): Connection refused
[uwsgi-http] unable to connect() to node “127.0.0.1:57382” (3 retries): Connection refused
— (skip)
I appreciate any help! I just want to call some variants with gatk tools with some sequencing data 