Update, I now have something coming up. Not sure what I did. I found another thread about tools not displaying HTML. From that they stated to make sure the tool set is listed in the Manage Allowlist. When I went to that page, it did list several tool sets there including JBrowse. However when I click on one of the buttons, I think owner, everything in the manage list got removed. So now my manage list is emply, but JBrowse is displaying. But it never displays any data, it looks to be stuck on “loading”.
I am confused now. The original message is tagged ‘usegalaxy.org’, while you somehow can access Allowlist. Do you use a personal Galaxy with admin access? I believe JBrowse should be in Allowlist to show the content.
Sorry, yes this is our own Galaxy server we are running. Didn’t realize the tag for the usegalaxy.org site, thought it was for general questions on Galaxy server. I have tried installing different versions of JBrowse but nothing has worked yet. Thinking it might be a permissions problem but I’m not sure where the data is saved on the server. The installation was done by the Galaxy user account on our server so I would assume all permissions should be set for that account to read/write.