This is a question for the LEfSe galaxy module: I have a question about comparing more than two classes. Is this possible in the module? I tried this but the results were a bit unexpected.
When I compare, for example, class A and class B or A and C or A and B, I get several distinct differences. However, when I compare A, B, and C together, I get only one difference that never appeared in the individual comparisons? Is that an expected result? Would you have any advice on this? Thank you!