We cannot provide much help with issues specific to LEfSE tools not working, unfortunately. Your best chance is to try to contact someone that maintains the lefse galaxy server, possibly at https://forum.biobakery.org/.
We cannot provide much help with issues specific to LEfSE tools not working, unfortunately. Your best chance is to try to contact someone that maintains the lefse galaxy server, possibly at https://forum.biobakery.org/.