Hello, trying to run interactive Glimma plots I see error with namespace version. How it is possible to fix it? Does limma use own R package o access R installed on server?
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
namespace ‘scales’ 1.1.1 is already loaded, but >= 1.2.0 is required
Calls: loadNamespace … asNamespace → loadNamespace → namespaceImport → loadNamespace
Execution halted
All tools run in container environments specific to that tool, and don’t access system dependencies.
You are working on your own server, correct? If you are not using managed dependencies, that would be the first thing to look into adjusting, and not just for this specific tool.
Please let us know what ends up working for you, thanks!
Hello, I installed scales 1.2.0 starting R directly from environment directory and the problem was solved.