Is there a tool I can use to map reads to make functional profile? (Like kraken is doing for taxonomics)
Hi @vebaev
The data processing logic goes something like this:
- Map reads to a genome
- Compare read genomic coordinates to annotation coordinates to associate known annotation “gene” identifiers with the reads
- Then: read → gene identifier → functional information
AnnotateMyIDs is one tool to do the last step.
Unfortunately its genome is not available.