I’m trying to run a quantification of fractionated TMT labeled MS data with Maxquant but it encounters an error stating:
Dataset Error Report
An error occurred while running the tool toolshed.g2.bx.psu.edu/repos/galaxyp/maxquant/maxquant/184.108.40.206+galaxy3 .
Execution resulted in the following messages:
Fatal error: Exit code 1 ()
Detected Common Potential Problems
The tool was executed with one or more duplicate input datasets. This frequently results in tool errors due to problematic input choices.
This suggests that at least two of the input data files are duplicates. However, after carefully checking each input file, I find none of the input files are duplicates.
How can I find out more specifically what is wrong with my input files? Or what the exact reason was the analysis encountered this fatal error?