Met frag Dataset Error Report


I am trying to process my LCMS datasets and compare the results with the database using the Metfrag tool. I used the following workflow: mzml>>>Rdata>>>XCMS>>>mspurity>>>Metfrag

I get the following error when i run the Metfrag tool.

Dataset Error Report

An error occurred while running the tool


Execution resulted in the following messages:

Fatal error: Exit code 1 ()

Tool generated the following standard error:

Traceback (most recent call last): File “/opt/galaxy/shed_tools/”, line 3, in import ConfigParser ModuleNotFoundError: No module named ‘ConfigParser’

Hi @Vignesh291

First, check to see that all of the upstream outputs have content (are not empty or only have headers). Why? Tools can sometimes fail with an error message like this when there is no input content for a tool to parse.

Then, if you cannot find the problem, please submit a bug report from the red error dataset to the server admins. You can include a link to this topic for context. Try to leave all inputs and outputs undeleted.