Hi Marco - This looks like a transient cluster error message. Please try a rerun and let us know if the job errors again. If it does, we can troubleshoot more from there.
Thank you for the quick reply. I reran the same job on Galaxy Australia and Europe. Galaxy Australia returned the same error while Galaxy Europe returned the error:
āFatal error: Exit code 2 ()
[06:15:49] Please rename your contigs OR try āācentre X --compliantā to generate clean contig names.ā
One other question. Is it possible to bin my contigs using Galaxy? I cant seem to find some of the binning programs I am familiar with such as MetaBAT, MaxBin, or ESOM on the Galaxy platform.
MaxBin2 is currently wrapped for Galaxy and available in the ToolShed https://usegalaxy.org/toolshed for use in your own local Galaxy. It is not installed at the usegalaxy.* public Galaxy servers.
The Mothur tool suite also has binning/clustering tools. These can be found in the ToolShed and also at the usegalaxy.* servers, including Galaxy Main https://usegalaxy.org. These tutorials include Mothur tools:
More metagenomics tools can be found in the ToolShed and at public Galaxy servers, usually under a tool section named like āMetagenomicsā. Those with a metagenomics domain-focus are listed here: https://galaxyproject.org/use/