I used STAR to analyze the paired-end reads and then STAR-fusion with the chimeric junctions file from STAR to detect fusion transcripts. The K562 SRA file from NCBI is used for the test run. The reference genome, GTF file and BLAST+ result file are all obtained from CTAT-RESOURCE-LIB. The galaxy ru…

No output of STAR Fusion in galaxy

jennaj September 21, 2022, 11:19pm 2

Topic		Replies	Views
RNA-star error (contact adminstrator) at UseGalaxy.org -- Resolved usegalaxy.org support transcriptomics , server-side-error , rna_star	12	1071	May 17, 2021
STAR-FUSION: "BLAST+-blastn of the reference fasta sequence with itself"- cannot generate a last-matching gene pairs file blast	0	427	April 24, 2022
RNA STAR is not running	0	478	December 8, 2019
STAR GTF file error for newbie usegalaxy.org support mapping , transcriptomics , reference-annotation , featurecounts	4	684	April 24, 2023
STAR mapping output BAM files: Aligned.toTranscriptome.out.bam	2	1470	August 16, 2019