Hi,
I have been trying to install cuffdiff, but when I checked the manage dependencies the bioconductor cummerbund package 2.16 showed up like none false and with a red X. Im trying to install the cummberbund from the galaxy repository and it never finished can be trying to install it for hours.
Not sure what is the problem?
@CARLOS_LIZAMA please do not use cufflinks anymore. This program is outdated there are better alternatives for RNA-seq analysis. Please check out this resource to get started: https://training.galaxyproject.org
I hope that helps,
Bjoern
Thanks to let me know. In general I use DESeq2 or limma. I was trying to install cuffdiff to compare some values from other others tools and I realized that I have problems installing cummerbund for cuffdiff.