snpeff iuc - error using different tools from package

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1

Hi,
I installed the latest repository (2019-10-15) of snpeff from iuc. It seems as the installation worked without any problems, however when using different tools from the package I am left with error messages.
E.g. Using snpeff databases in order to get a list of entries matching the following expressions “human”, the following error occurred: Fatal error: Exit code 1 (Error)
/export/galaxy-central/database/job_working_directory/000/23/tool_script.sh: line 25: snpEff: command not found

Would a make sense to use an older repository?
Thanks for the help!

2

Hi @roselucia

This looks like a configuration problem. I’ve asked the IUC about it at Gitter. Feel free to join in there. They may reply there or here: https://gitter.im/galaxy-iuc/iuc?at=5daa2473c864f36506112e30

Meanwhile, the Galaxy docker version you are using might be helpful info. Where/how did you source it?

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Hi @jennaj,

I used the following docker image: https://github.com/bgruening/docker-galaxy-stable. It is Galaxy version 18.09.
I joined the discussion! Thanks for your help.
Meanwhile, would it make sense to use an old repository?

Many thanks!

Alle the best,
Rose