This is the full error:
/mnt/home/galaxy/database/jobs_directory/000/104/tool_script.sh: line 9: wine64_anyuser: command not found
If I navigate to the manage dependencies view, I can see that wine64 is not installed, and msconverrt is listed in the section ‘no requirements defined’, so for some reason it isn’t telling galaxy that it needs wine64 to run. However I have used msconvert in other (admittedly much more mature) galaxy instances. Does anyone have any ideas?
I don’t know this tool but it looks like that installation requires some extra steps:
see tools-galaxyp/tools/msconvert at master · galaxyproteomics/tools-galaxyp · GitHub including running a container. See here for the container Docker Hub
Did you do this?
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