I am performing Metagenomics analysis. I am now at the step of phylogenetic and functional profiling. I intended to use Metaphlan2 and Diamond but the databases are not available. I am using a local Galaxy server to run my analysis.
I would like to know how to overcome the unavailability of the databases. An alternative could be to use MegaBlast. However, for this tool as well there is no option available for the database.
Thank you for taking into account my inquiry.