Hi, I am trying to download a large collection of BAM files through the command line. I have an API key, which is the last part of the download link needed to be specified; however I am lost on where to find the download link for the entire collection (links from each individual dataset are available). The “disk” button does not retrieve/or is associated with a link (see screenshot)
Thanks in advanced,
Thanks for asking about this. We knew that the functionality was dropped in the new/beta history view but weren’t sure if anyone was actually using it or not. Sounds like it is!
I created an issue ticket to add in the function. Details are here along with available workarounds: New/beta history: add functionality to enable capture of a collection's URL · Issue #14896 · galaxyproject/galaxy · GitHub
Please feel free to comment/upvote that ticket plus you can follow it for updates