Hi,
BBtools: How can I get a result graph in the BBmap align output where I can get the number of total aligned and total unpaired sequence lengths and maybe the percentage ratio?
Would the tools:
- Samtools flagstat
- Samtools idxstats
- Samtools stats
help to answer your questions?
Not sure what you mean with “result graph”.
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Thank you very much, I found what I wanted with your suggestions 