BBtools: BBmap aligned


BBtools: How can I get a result graph in the BBmap align output where I can get the number of total aligned and total unpaired sequence lengths and maybe the percentage ratio?

Would the tools:

  • Samtools flagstat
  • Samtools idxstats
  • Samtools stats

help to answer your questions?
Not sure what you mean with “result graph”.


Thank you very much, I found what I wanted with your suggestions :slight_smile: