ChIP seq bam files READ COUNT and biasnes towards imprinted genes

I have allele specific (paternal and maternal) bam files from ChIP seq data. I want to see the differences in read counts at the Imprinted genes. How to go about it??
How to do I get read counts from bam files.

Hi @Isha_Singh
maybe check Epigenetics section in GTN tutorials Galaxy Training!
Kind regards,

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