Trying to use Wig/BedGraph-to-bigWig tool for a file generated with mapping to CHM13 T2T but the bedgraph file I am trying to convert does not allow me to designate the reference genome as CHM13 T2T (it does not come up on the list).

[image] TTP: RuntimeError: Invalid interval bounds! This part of the error indicates a mismatch between the chromosomes + coordinates between the two inputs. Double check that all are based on the exact same reference genome assembly/build. You have mentioned both hg38 and CHM13_T2T_v2.0 – s…

CHM13 T2T genome not found in options for some tools

usegalaxy.org support

jennaj Split this topic July 20, 2023, 10:14pm 10

2 posts were split to a new topic: SAM BAM conversion and sort order

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CHM13 T2T genome not found in options for some tools

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