I have an unknown bacterial genome and I recently assembled contigs using SPAdes -meta. Then, I reordered the contigs using MAUVE. So, I know have a fasta file that has ordered contigs.
I would like to use Galaxy to determine three simple things:
- % coding (I have read average for bacteria is 88%)
- number of genes
- number of protein-coding genes
What may be some simple steps to determine any of these three goals using my ordered contigs file? Thank you for sharing your knowledge.