eggNOG long run time

Hello! I have an eggnog job that has been running since October 12, 2024, but it still hasn’t finished after almost 7 days. May I know if my job is still running?

Hi @cotton
I don’t have admin access to Galaxy Europe and cannot check the job status, but the run time is rather unusual. eggNOG is sensitive to data and job setup. If your file has long contigs, make sure you check the documentation and use optimal settings. I did some testing years ago, a big contigs and the same sequence split into smaller chunks, were submitted with the same setup. Job with fragmented sequences was completed in 20 minutes, and I terminated the job on the intact contig after 24 hours.

Kind regards,
Igor

1 Like

Thank you! Will terminate this now and try another one.